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People matching "Analysis of categorical data"
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Associate Professor Zudi Lu Associate Professor in Statistics and ARC Future Fellow
More about Zudi Lu...
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Courses matching "Analysis of categorical data"
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Analysis of multivariable and high dimensional data
Multivariate analysis of data is performed with the aims to
1. understand the structure in data and summarise the data in simpler ways;
2. understand the relationship of one part of the data to another part; and
3. make decisions or draw inferences based on data.
The statistical analyses of multivariate data extend those of univariate data, and in doing so require
more advanced mathematical theory and computational techniques. The course begins with a
discussion of the three classical methods Principal Component Analysis, Canonical Correlation
Analysis and Discriminant Analysis which correspond to the aims above. We also learn about
Cluster Analysis, Factor Analysis and newer methods including Independent Component Analysis.
For most real data the underlying distribution is not known, but if the assumptions of multivariate
normality of the data hold, extra properties can be derived. Our treatment combines ideas,
theoretical properties and a strong computational component for each of the different methods we
discuss. For the computational part -- with Matlab -- we make use of real data and learn the use
of simulations in order to assess the performance of different methods in practice.
Topics covered:
1. Introduction to multivariate data, the multivariate normal distribution
2. Principal Component Analysis, theory and practice
3. Canonical Correlation Analysis, theory and practice
4. Discriminant Analysis, Fisher's LDA, linear and quadratic DA
5. Cluster Analysis: hierarchical and k-means methods
6. Factor Analysis and latent variables
7. Independent Component Analysis including an Introduction to Information Theory
The course will be based on my forthcoming monograph
Analysis of Multivariate and High-Dimensional Data - Theory and Practice, to be published by
Cambridge University Press.
More about this course...
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Complex Analysis III
When the real numbers are replaced by the complex numbers in the definition of the derivative of a function, the resulting (complex-)differentiable functions turn out to have many remarkable properties not enjoyed by their real analogues. These functions, usually known as holomorphic functions, have numerous applications in areas such as engineering, physics, differential equations and number theory, to name just a few. The focus of this course is on the study of holomorphic functions and their most important basic properties. Topics covered are: Complex numbers and functions; complex limits and differentiability; elementary examples; analytic functions; complex line integrals; Cauchy's theorem and the Cauchy integral formula; Taylor's theorem; zeros of holomorphic functions; RouchÃÂÃÂÃÂÃÂÃÂÃÂÃÂÿ's Theorem; the Open Mapping theorem and Inverse Function theorem; Schwarz' Lemma; automorphisms of the ball, the plane and the Riemann sphere; isolated singularities and their classification; Laurent series; the Residue Theorem; calculation of definite integrals and evaluation of infinite series using residues; outlines of the Jordan Curve Theorem, Montel's Theorem and the Riemann Mapping Theorem.
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Integration and Analysis III
The Riemann integral works well for continuous functions on closed bounded intervals, but it has certain deficiencies that cause problems, for example, in Fourier analysis and in the theory of differential equations. To overcome such deficiencies, a "new and improved" version of the integral was developed around the beginning of the twentieth century, and it is this theory with which this course is concerned. The underlying basis of the theory, measure theory, has important applications not just in analysis but also in the modern theory of probability.
Topics covered are: Set theory; Lebesgue outer measure; measurable sets; measurable functions. Integration of measurable functions over measurable sets. Convergence of sequences of functions and their integrals. General measure spaces and product measures. Fubini and Tonelli's theorems. Lp spaces. The Radon-Nikodym theorem. The Riesz representation theorem. Integration and Differentiation.
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Real Analysis
Modern mathematics and physics rely on our ability to be able to solve equations, if not in explicit exact forms, then at least in being able to establish the existence of solutions. To do this requires a knowledge of so-called ``analysis", which in many respects is just Calculus in very general settings. The foundations for this work are commenced in Real Analysis, a course that develops this basic material in a systematic and rigorous manner in the context of real-valued functions of a real variable. Topics covered are: Basic set theory. The real numbers, least upper bounds, completeness and its consequences. Sequences: convergence, subsequences, Cauchy sequences. Open, closed, and compact sets of real numbers. Continuous functions, uniform continuity. Differentiation, the Mean Value Theorem. Sequences and series of functions, pointwise and uniform convergence. Power series and Taylor series. Metric spaces: basic notions generalised from the setting of the real numbers. The space of continuous functions on a compact interval. The Contraction Principle. Picard's Theorem on the existence and uniqueness of solutions of ordinary differential equations.
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Statistical Analysis and Modelling 1
This is a first course in Statistics for mathematically inclined students. It will address the key principles underlying commonly used statistical methods such as confidence intervals, hypothesis tests, inference for means and proportions, and linear regression. It will develop a deeper mathematical understanding of these ideas, many of which will be familiar from studies in secondary school. The application of basic and more advanced statistical methods will be illustrated on a range of problems from areas such as medicine, science, technology, government, commerce and manufacturing. The use of the statistical package SPSS will be developed through a sequence of computer practicals. Topics covered will include: basic probability and random variables, fundamental distributions, inference for means and proportions, comparison of independent and paired samples, simple linear regression, diagnostics and model checking, multiple linear regression, simple factorial models, models with factors and continuous predictors.
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Topology and Analysis III
Solving equations is a crucial aspect of working in mathematics, physics, engineering, and many other fields. These equations might be straightforward algebraic statements, or complicated systems of differential equations, but there are some fundamental questions common to all of these settings: does a solution exist? If so, is it unique? And if we know of the existence of some specific solution, how do we determine it explicitly or as accurately as possible? This course develops the foundations required to rigorously establish the existence of solutions to various equations, thereby laying the basis for the study of solutions. Through an understanding of the foundations of analysis, we obtain insight critical in numerous areas of application, such areas ranging across physics, engineering, economics and finance. Topics covered are: sets, functions, metric spaces and normed linear spaces, compactness, connectedness, and completeness. Banach fixed point theorem and applications, uniform continuity and convergence. General topological spaces, generating topologies, topological invariants, quotient spaces. Introduction to Hilbert spaces and bounded operators on Hilbert spaces.
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Events matching "Analysis of categorical data"
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Watching evolution in real time; problems and potential research areas.
15:10 Fri 26 May 06 :: G08. Mathematics Building University of Adelaide :: Prof Alan Cooper (Federation Fellow)
Recent studies (1) have indicated problems with our
ability to use the genetic distances between species to estimate the
time since their divergence (so called molecular clocks). An
exponential decay curve has been detected in comparisons of closely
related taxa in mammal and bird groups, and rough approximations
suggest that molecular clock calculations may be problematic for the
recent past (eg <1 million years). Unfortunately, this period
encompasses a number of key evolutionary events where estimates of
timing are critical such as modern human evolutionary history, the
domestication of animals and plants, and most issues involved in
conservation biology. A solution (formulated at UA) will be briefly
outlined. A second area of active interest is the recent suggestion
(2) that mitochondrial DNA diversity does not track population size in
several groups, in contrast to standard thinking. This finding has
been interpreted as showing that mtDNA may not be evolving neutrally,
as has long been assumed.
Large ancient DNA datasets provide a means to examine these issues, by
revealing evolutionary processes in real time (3). The data also
provide a rich area for mathematical investigation as temporal
information provides information about several parameters that are
unknown in serial coalescent calculations (4). References:
- Ho SYW et al. Time dependency of molecular rate estimates and
systematic overestimation of recent divergence
times. Mol. Biol. Evol. 22, 1561-1568 (2005);
Penny D, Nature 436, 183-184 (2005).
- Bazin E., et al. Population size does not influence mitochondrial
genetic diversity in animals. Science 312, 570 (2006);
Eyre-Walker A. Size does not matter for mitochondrial DNA,
Science 312, 537 (2006).
- Shapiro B, et al. Rise and fall of the Beringian steppe
bison. Science 306: 1561-1565 (2004);
Chan et al. Bayesian estimation of the timing and severity of a
population bottleneck from ancient DNA. PLoS Genetics, 2 e59
(2006).
- Drummond et al. Measurably evolving populations, Trends in
Ecol. Evol. 18, 481-488 (2003);
Drummond et al. Bayesian coalescent inference of past population
dynamics from molecular sequences. Molecular Biology Evolution
22, 1185-92 (2005).
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A Bivariate Zero-inflated Poisson Regression Model and application to some Dental Epidemiological data 14:10 Fri 27 Oct 06 :: G08 Mathematics Building University of Adelaide :: University Prof Sudhir Paul
Data in the form of paired (pre-treatment, post-treatment) counts arise in the study of the effects of several treatments after accounting for possible covariate effects. An example of such a data set comes from a dental epidemiological study in Belo Horizonte (the Belo Horizonte caries prevention study) which evaluated various programmes for reducing caries. Also, these data may show extra pairs of zeros than can be accounted for by a simpler model, such as, a bivariate Poisson regression model. In such situations we propose to use a zero-inflated bivariate Poisson regression (ZIBPR) model for the paired (pre-treatment, posttreatment) count data. We develop EM algorithm to obtain maximum likelihood estimates of the parameters of the ZIBPR model. Further, we obtain exact Fisher information matrix of the maximum likelihood estimates of the parameters of the ZIBPR model and develop a procedure for testing treatment effects. The procedure to detect treatment effects based on the ZIBPR model is compared, in terms of size, by simulations, with an earlier procedure using a zero-inflated Poisson regression (ZIPR) model of the post-treatment count with the pre-treatment count treated as a covariate. The procedure based on the ZIBPR model holds level most effectively. A further simulation study indicates good power property of the procedure based on the ZIBPR model. We then compare our analysis, of the decayed, missing and filled teeth (DMFT) index data from the caries prevention study, based on the ZIBPR model with the analysis using a zero-inflated Poisson regression model in which the pre-treatment DMFT index is taken to be a covariate
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Likelihood inference for a problem in particle physics 15:10 Fri 27 Jul 07 :: G04 Napier Building University of Adelaide :: Prof. Anthony Davison
The Large Hadron Collider (LHC), a particle accelerator located at CERN, near Geneva, is (currently!) expected to start operation in early 2008. It is located in an underground tunnel 27km in circumference, and when fully operational, will be the world's largest and highest energy particle accelerator. It is hoped that it will provide evidence for the existence of the Higgs boson, the last remaining particle of the so-called Standard Model of particle physics. The quantity of data that will be generated by the LHC is roughly equivalent to that of the European telecommunications network, but this will be boiled down to just a few numbers. After a brief introduction, this talk will outline elements of the statistical problem of detecting the presence of a particle, and then sketch how higher order likelihood asymptotics may be used for signal detection in this context. The work is joint with Nicola Sartori, of the Università Ca' Foscari, in Venice.
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Regression: a backwards step? 13:10 Fri 7 Sep 07 :: Maths G08 :: Dr Gary Glonek
Media...
Most students of high school mathematics will have encountered the technique of fitting a line to data by least squares. Those who have taken a university statistics course will also have heard this method referred to as regression. However, it is not obvious from common dictionary definitions why this should be the case. For example, "reversion to an earlier or less advanced state or form". In this talk, the mathematical phenomenon that gave regression its name will be explained and will be shown to have implications in some unexpected contexts.
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The Linear Algebra of Internet Search Engines 15:10 Fri 5 Oct 07 :: G04 Napier Building University of Adelaide :: Dr Lesley Ward :: School of Mathematics and Statistics, University of South Australia
We often want to search the web for information on a given topic. Early web-search algorithms worked by counting up the number of times the words in a query topic appeared on each webpage. If the topic words appeared often on a given page, that page was ranked highly as a source of information on that topic.
More recent algorithms rely on Link Analysis. People make judgments about how useful a given page is for a given topic, and they express these judgments through the hyperlinks they choose to put on their own webpages. Link-analysis algorithms aim to mine the collective wisdom encoded in the resulting network of links.
I will discuss the linear algebra that forms the common underpinning of three link-analysis algorithms for web search. I will also present some work on refining one such algorithm, Kleinberg's HITS algorithm.
This is joint work with Joel Miller, Greg Rae, Fred Schaefer, Ayman Farahat, Tom LoFaro, Tracy Powell, Estelle Basor, and Kent Morrison. It originated in a Mathematics Clinic project at Harvey Mudd College.
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Statistical Critique of the International Panel on Climate Change's work on Climate Change. 18:00 Wed 17 Oct 07 :: Union Hall University of Adelaide :: Mr Dennis Trewin
Climate change is one of the most important issues facing us today. Many governments have introduced or are developing appropriate policy interventions to (a) reduce the growth of greenhouse gas emissions in order to mitigate future climate change, or (b) adapt to future climate change.
This important work deserves a high quality statistical data base but there are statistical shortcomings in the work of the International Panel on Climate Change (IPCC). There has been very little involvement of qualified statisticians in the very important work of the IPCC which appears to be scientifically meritorious in most other ways.
Mr Trewin will explain these shortcomings and outline his views on likely future climate change, taking into account the statistical deficiencies.
His conclusions suggest climate change is still an important issue that needs to be addressed but the range of likely outcomes is a lot lower than has been suggested by the IPCC.
This presentation will be based on an invited paper presented at the OECD World Forum.
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Moderated Statistical Tests for Digital Gene Expression Technologies 15:10 Fri 19 Oct 07 :: G04 Napier Building University of Adelaide :: Dr Gordon Smyth :: Walter and Eliza Hall Institute of Medical Research in Melbourne, Australia
Digital gene expression (DGE) technologies measure gene expression by counting sequence tags. They are sensitive technologies for measuring gene expression on a genomic scale, without the need for prior knowledge of the genome sequence. As the cost of DNA sequencing decreases, the number of DGE datasets is expected to grow dramatically. Various tests of differential expression have been proposed for replicated DGE data using over-dispersed binomial or Poisson models for the counts, but none of the these are usable when the number of replicates is very small. We develop tests using the negative binomial distribution to model overdispersion relative to the Poisson, and use conditional weighted likelihood to moderate the level of overdispersion across genes. A heuristic empirical Bayes algorithm is developed which is applicable to very general likelihood estimation contexts. Not only is our strategy applicable even with the smallest number of replicates, but it also proves to be more powerful than previous strategies when more replicates are available. The methodology is applicable to other counting technologies, such as proteomic spectral counts.
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Global and Local stationary modelling in finance: Theory and empirical evidence 14:10 Thu 10 Apr 08 :: G04 Napier Building University of Adelaide :: Prof. Dominique Guégan :: Universite Paris 1 Pantheon-Sorbonne
To model real data sets using second order stochastic processes imposes that the data sets verify the second order stationarity condition. This stationarity condition concerns the unconditional moments of the process. It is in that context that most of models developed from the sixties' have been studied; We refer to the ARMA processes (Brockwell and Davis, 1988), the ARCH, GARCH and EGARCH models (Engle, 1982, Bollerslev, 1986, Nelson, 1990), the SETAR process (Lim and Tong, 1980 and Tong, 1990), the bilinear model (Granger and Andersen, 1978, Guégan, 1994), the EXPAR model (Haggan and Ozaki, 1980), the long memory process (Granger and Joyeux, 1980, Hosking, 1981, Gray, Zang and Woodward, 1989, Beran, 1994, Giraitis and Leipus, 1995, Guégan, 2000), the switching process (Hamilton, 1988). For all these models, we get an invertible causal solution under specific conditions on the parameters, then the forecast points and the forecast intervals are available.
Thus, the stationarity assumption is the basis for a general asymptotic theory for identification, estimation and forecasting. It guarantees that the increase of the sample size leads to more and more information of the same kind which is basic for an asymptotic theory to make sense.
Now non-stationarity modelling has also a long tradition in econometrics. This one is based on the conditional moments of the data generating process. It appears mainly in the heteroscedastic and volatility models, like the GARCH and related models, and stochastic volatility processes (Ghysels, Harvey and Renault 1997). This non-stationarity appears also in a different way with structural changes models like the switching models (Hamilton, 1988), the stopbreak model (Diebold and Inoue, 2001, Breidt and Hsu, 2002, Granger and Hyung, 2004) and the SETAR models, for instance. It can also be observed from linear models with time varying coefficients (Nicholls and Quinn, 1982, Tsay, 1987).
Thus, using stationary unconditional moments suggest a global stationarity for the model, but using non-stationary unconditional moments or non-stationary conditional moments or assuming existence of states suggest that this global stationarity fails and that we only observe a local stationary behavior.
The growing evidence of instability in the stochastic behavior of stocks, of exchange rates, of some economic data sets like growth rates for instance, characterized by existence of volatility or existence of jumps in the variance or on the levels of the prices imposes to discuss the assumption of global stationarity and its consequence in modelling, particularly in forecasting. Thus we can address several questions with respect to these remarks.
1. What kinds of non-stationarity affect the major financial and economic data sets? How to detect them?
2. Local and global stationarities: How are they defined?
3. What is the impact of evidence of non-stationarity on the statistics computed from the global non stationary data sets?
4. How can we analyze data sets in the non-stationary global framework? Does the asymptotic theory work in non-stationary framework?
5. What kind of models create local stationarity instead of global stationarity? How can we use them to develop a modelling and a forecasting strategy?
These questions began to be discussed in some papers in the economic literature. For some of these questions, the answers are known, for others, very few works exist. In this talk I will discuss all these problems and will propose 2 new stategies and modelling to solve them. Several interesting topics in empirical finance awaiting future research will also be discussed.
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Computational Methods for Phase Response Analysis of Circadian Clocks 15:10 Fri 18 Jul 08 :: G04 Napier Building University of Adelaide. :: Prof. Linda Petzold :: Dept. of Mechanical and Environmental Engineering, University of California, Santa Barbara
Circadian clocks govern daily behaviors of organisms in all kingdoms of life. In mammals, the master clock resides in the suprachiasmatic nucleus (SCN) of the hypothalamus. It is composed of thousands of neurons, each of which contains a sloppy oscillator - a molecular clock governed by a transcriptional feedback network. Via intercellular signaling, the cell population synchronizes spontaneously, forming a coherent oscillation. This multi-oscillator is then entrained to its environment by the daily light/dark cycle.
Both at the cellular and tissular levels, the most important feature of the clock is its ability not simply to keep time, but to adjust its time, or phase, to signals. We present the parametric impulse phase response curve (pIPRC), an analytical analog to the phase response curve (PRC) used experimentally. We use the pIPRC to understand both the consequences of intercellular signaling and the light entrainment process. Further, we determine which model components determine the phase response behavior of a single oscillator by using a novel model reduction technique. We reduce the number of model components while preserving the pIPRC and then incorporate the resultant model into a couple SCN tissue model. Emergent properties, including the ability of the population to synchronize spontaneously are preserved in the reduction. Finally, we present some mathematical tools for the study of synchronization in a network of coupled, noisy oscillators.
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Elliptic equation for diffusion-advection flows 15:10 Fri 15 Aug 08 :: G03 Napier Building University of Adelaide :: Prof. Pavel Bedrikovsetsky :: Australian School of Petroleum Science, University of Adelaide.
The standard diffusion equation is obtained by Einstein's method and its generalisation, Fokker-Plank-Kolmogorov-Feller theory. The time between jumps in Einstein derivation is constant.
We discuss random walks with residence time distribution, which occurs for flows of solutes and suspensions/colloids in porous media, CO2 sequestration in coal mines, several processes in chemical, petroleum and environmental engineering. The rigorous application of the Einstein's method results in new equation, containing the time and the mixed dispersion terms expressing the dispersion of the particle time steps.
Usually, adding the second time derivative results in additional initial data. For the equation derived, the condition of limited solution when time tends to infinity provides with uniqueness of the Caushy problem solution.
The solution of the pulse injection problem describing a common tracer injection experiment is studied in greater detail. The new theory predicts delay of the maximum of the tracer, compared to the velocity of the flow, while its forward "tail" contains much more particles than in the solution of the classical parabolic (advection-dispersion) equation. This is in agreement with the experimental observations and predictions of the direct simulation.
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Oceanographic Research at the South Australian Research and Development Institute: opportunities for collaborative research 15:10 Fri 21 Nov 08 :: Napier G04 :: Associate Prof John Middleton :: South Australian Research and Development Institute
Increasing threats to S.A.'s fisheries and marine environment have underlined the increasing need for soundly based research into the ocean circulation and ecosystems (phyto/zooplankton) of the shelf and gulfs. With support of Marine Innovation SA, the Oceanography Program has within 2 years, grown to include 6 FTEs and a budget of over $4.8M. The program currently leads two major research projects, both of which involve numerical and applied mathematical modelling of oceanic flow and ecosystems as well as statistical techniques for the analysis of data. The first is the implementation of the Southern Australian Integrated Marine Observing System (SAIMOS) that is providing data to understand the dynamics of shelf boundary currents, monitor for climate change and understand the phyto/zooplankton ecosystems that under-pin SA's wild fisheries and aquaculture. SAIMOS involves the use of ship-based sampling, the deployment of underwater marine moorings, underwater gliders, HF Ocean RADAR, acoustic tracking of tagged fish and Autonomous Underwater vehicles.
The second major project involves measuring and modelling the ocean circulation and biological systems within Spencer Gulf and the impact on prawn larval dispersal and on the sustainability of existing and proposed aquaculture sites. The discussion will focus on opportunities for collaborative research with both faculty and students in this exciting growth area of S.A. science.
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Key Predistribution in Grid-Based Wireless Sensor Networks 15:10 Fri 12 Dec 08 :: Napier G03 :: Dr Maura Paterson :: Information Security Group at Royal Holloway, University of London.
Wireless sensors are small, battery-powered devices that are deployed to
measure quantities such as temperature within a given region, then form
a wireless network to transmit and process the data they collect.
We discuss the problem of distributing symmetric cryptographic keys to
the nodes of a wireless sensor network in the case where the sensors are
arranged in a square or hexagonal grid, and we propose a key
predistribution scheme for such networks that is based on Costas arrays.
We introduce more general structures known as distinct-difference
configurations, and show that they provide a flexible choice of
parameters in our scheme, leading to more efficient performance than
that achieved by prior schemes from the literature.
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From histograms to multivariate polynomial histograms and shape estimation 12:10 Thu 19 Mar 09 :: Napier 210 :: A/Prof Inge Koch
Media...
Histograms are convenient and easy-to-use tools for estimating the shape of
data, but they have serious problems which are magnified for multivariate data.
We combine classic histograms with shape estimation by polynomials. The new
relatives, `polynomial histograms', have surprisingly nice mathematical
properties, which we will explore in this talk. We also show how they can be
used for real data of 10-20 dimensions to analyse and understand the shape of
these data.
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Multi-scale tools for interpreting cell biology data 15:10 Fri 17 Apr 09 :: Napier LG29 :: Dr Matthew Simpson :: University of Melbourne
Trajectory data from observations of a random walk process are often used to characterize macroscopic transport coefficients and to infer motility mechanisms in cell biology. New continuum equations describing the average moments of the position of an individual agent in a population of interacting agents are derived and validated. Unlike standard noninteracting random walks, the new moment equations explicitly represent the interactions between agents as they are coupled to the macroscopic agent density. Key issues associated with the validity of the new continuum equations and the interpretation of experimental data will be explored.
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Statistical analysis for harmonized development of systemic organs in human fetuses 11:00 Thu 17 Sep 09 :: School Board Room :: Prof Kanta Naito :: Shimane University
The growth processes of human babies have been studied
sufficiently in scientific fields, but there have still been many issues
about the developments of human fetus which are not clarified. The aim of
this research is to investigate the developing process of systemic organs of
human fetuses based on the data set of measurements of fetus's bodies and
organs. Specifically, this talk is concerned with giving a mathematical
understanding for the harmonized developments of the organs of human
fetuses. The method to evaluate such harmonies is proposed by the use of the
maximal dilatation appeared in the theory of quasi-conformal mapping.
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Contemporary frontiers in statistics 15:10 Mon 28 Sep 09 :: Badger Labs G31 Macbeth Lectrue :: Prof. Peter Hall :: University of Melbourne
The availability of powerful computing equipment has had a dramatic impact on statistical methods and thinking, changing forever the way data are analysed. New data types, larger quantities of data, and new classes of research problem are all motivating new statistical methods. We shall give examples of each of these issues, and discuss the current and future directions of frontier problems in statistics.
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Exploratory experimentation and computation 15:10 Fri 16 Apr 10 :: Napier LG29 :: Prof Jonathan Borwein :: University of Newcastle
Media...
The mathematical research community is facing a great challenge to re-evaluate the role of proof in light of the growing power of current computer systems, of modern mathematical computing packages, and of the growing capacity to data-mine on the Internet. Add to that the enormous complexity of many modern capstone results such as the Poincare conjecture, Fermat's last theorem, and the Classification of finite simple groups. As the need and prospects for inductive mathematics blossom, the requirement to ensure the role of proof is properly founded remains undiminished. I shall look at the philosophical context with examples and then offer some of five bench-marking examples of the opportunities and challenges we face.
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Estimation of sparse Bayesian networks using a score-based approach 15:10 Fri 30 Apr 10 :: School Board Room :: Dr Jessica Kasza :: University of Copenhagen
The estimation of Bayesian networks given high-dimensional data sets, with more variables than there are observations, has been the focus of much recent research. These structures provide a flexible framework for the representation of the conditional independence relationships of a set of variables, and can be particularly useful in the estimation of genetic regulatory networks given gene expression data.
In this talk, I will discuss some new research on learning sparse networks, that is, networks with many conditional independence restrictions, using a score-based approach. In the case of genetic regulatory networks, such sparsity reflects the view that each gene is regulated by relatively few other genes. The presented approach allows prior information about the overall sparsity of the underlying structure to be included in the analysis, as well as the incorporation of prior knowledge about the connectivity of individual nodes within the network.
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Interpolation of complex data using spatio-temporal compressive sensing 13:00 Fri 28 May 10 :: Santos Lecture Theatre :: A/Prof Matthew Roughan :: School of Mathematical Sciences, University of Adelaide
Many complex datasets suffer from missing data, and interpolating these missing
elements is a key task in data analysis. Moreover, it is often the case that we
see only a linear combination of the desired measurements, not the measurements
themselves. For instance, in network management, it is easy to count the traffic
on a link, but harder to measure the end-to-end flows. Additionally, typical
interpolation algorithms treat either the spatial, or the temporal
components of data separately, but in many real datasets have strong
spatio-temporal structure that we would like to exploit in reconstructing the
missing data. In this talk I will describe a novel reconstruction algorithm that
exploits concepts from the growing area of compressive sensing to solve all of
these problems and more. The approach works so well on Internet traffic matrices
that we can obtain a reasonable reconstruction with as much as 98% of the
original data missing.
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A variance constraining ensemble Kalman filter: how to improve forecast using climatic data of unobserved variables 15:10 Fri 28 May 10 :: Santos Lecture Theatre :: A/Prof Georg Gottwald :: The University of Sydney
Data assimilation aims to solve one of the fundamental problems ofnumerical weather prediction - estimating the optimal state of the
atmosphere given a numerical model of the dynamics, and sparse, noisy
observations of the system. A standard tool in attacking this
filtering problem is the Kalman filter.
We consider the problem when only partial observations are available.
In particular we consider the situation where the observational space
consists of variables which are directly observable with known
observational error, and of variables of which only their climatic
variance and mean are given. We derive the corresponding Kalman
filter in a variational setting.
We analyze the variance constraining Kalman filter (VCKF) filter for
a simple linear toy model and determine its range of optimal
performance. We explore the variance constraining Kalman filter in an
ensemble transform setting for the Lorenz-96 system, and show that
incorporating the information on the variance on some un-observable
variables can improve the skill and also increase the stability of
the data assimilation procedure.
Using methods from dynamical systems theory we then systems where the
un-observed variables evolve deterministically but chaotically on a
fast time scale.
This is joint work with Lewis Mitchell and Sebastian Reich.
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Meteorological drivers of extreme bushfire events in southern Australia 15:10 Fri 2 Jul 10 :: Benham Lecture Theatre :: Prof Graham Mills :: Centre for Australian Weather and Climate Research, Melbourne
Bushfires occur regularly during summer in southern Australia, but only a few of these fires become iconic due to their effects, either in terms of loss of life or economic and social cost. Such events include Black Friday (1939), the Hobart fires (1967), Ash Wednesday (1983), the Canberra bushfires (2003), and most recently Black Saturday in February 2009. In most of these events the weather of the day was statistically extreme in terms of heat, (low) humidity, and wind speed, and in terms of antecedent drought. There are a number of reasons for conducting post-event analyses of the meteorology of these events. One is to identify any meteorological circulation systems or dynamic processes occurring on those days that might not be widely or hitherto recognised, to document these, and to develop new forecast or guidance products. The understanding and prediction of such features can be used in the short term to assist in effective management of fires and the safety of firefighters and in the medium range to assist preparedness for the onset of extreme conditions. The results of such studies can also be applied to simulations of future climates to assess the likely changes in frequency of the most extreme fire weather events, and their documentary records provide a resource that can be used for advanced training purposes. In addition, particularly for events further in the past, revisiting these events using reanalysis data sets and contemporary NWP models can also provide insights unavailable at the time of the events.
Over the past few years the Bushfire CRC's Fire Weather and Fire Danger project in CAWCR has studied the mesoscale meteorology of a number of major fire events, including the days of Ash Wednesday 1983, the Dandenong Ranges fire in January 1997, the Canberra fires and the Alpine breakout fires in January 2003, the Lower Eyre Peninsula fires in January 2005 and the Boorabbin fire in December 2007-January 2008. Various aspects of these studies are described below, including the structures of dry cold frontal wind changes, the particular character of the cold fronts associated with the most damaging fires in southeastern Australia, and some aspects of how the vertical temperature and humidity structure of the atmosphere may affect the fire weather at the surface.
These studies reveal much about these major events, but also suggest future research directions, and some of these will be discussed.
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Mathematica Seminar 15:10 Wed 28 Jul 10 :: Engineering Annex 314 :: Kim Schriefer :: Wolfram Research
The Mathematica Seminars 2010 offer an opportunity to experience the applicability, ease-of-use, as well as the advancements of Mathematica 7 in education and academic research. These seminars will highlight the latest directions in technical computing with Mathematica, and the impact this technology has across a wide range of academic fields, from maths, physics and biology to finance, economics and business.
Those not yet familiar with Mathematica will gain an overview of the system and discover the breadth of applications it can address, while experts will get firsthand experience with recent advances in Mathematica like parallel computing, digital image processing, point-and-click palettes, built-in curated data, as well as courseware examples.
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A spatial-temporal point process model for fine resolution multisite rainfall data from Roma, Italy 14:10 Thu 19 Aug 10 :: Napier G04 :: A/Prof Paul Cowpertwait :: Auckland University of Technology
A point process rainfall model is further developed that has storm origins occurring in space-time according to a Poisson process. Each storm origin has a random radius so that storms occur as circular regions in two-dimensional
space, where the storm radii are taken to be independent exponential random
variables. Storm origins are of random type z, where z follows a continuous
probability distribution. Cell origins occur in a further spatial Poisson
process and have arrival times that follow a Neyman-Scott point process. Cell
origins have random radii so that cells form discs in two-dimensional space.
Statistical properties up to third order are derived and used to fit the model
to 10 min series taken from 23 sites across the Roma region, Italy.
Distributional properties of the observed annual maxima are compared to
equivalent values sampled from series that are simulated using the fitted
model. The results indicate that the model will be of use in urban drainage
projects for the Roma region.
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Simultaneous confidence band and hypothesis test in generalised varying-coefficient models 15:05 Fri 10 Sep 10 :: Napier LG28 :: Prof Wenyang Zhang :: University of Bath
Generalised varying-coefficient models (GVC) are very important
models. There are a considerable number of literature addressing these models.
However, most of the existing literature are devoted to the estimation
procedure. In this talk, I will systematically investigate the statistical
inference for GVC, which includes confidence band as well as hypothesis test. I
will show the asymptotic distribution of the maximum discrepancy between the
estimated functional coefficient and the true functional coefficient. I will
compare different approaches for the construction of confidence band and
hypothesis test. Finally, the proposed statistical inference methods are used to
analyse the data from China about contraceptive use there, which leads to some
interesting findings.
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Principal Component Analysis Revisited 15:10 Fri 15 Oct 10 :: Napier G04 :: Assoc. Prof Inge Koch :: University of Adelaide
Since the beginning of the 20th century, Principal Component Analysis (PCA) has been an important tool in the analysis of multivariate data. The principal components summarise data in fewer than the original number of variables without losing essential information, and thus allow a split of the data into signal and noise components. PCA is a linear method, based on elegant mathematical theory.
The increasing complexity of data together with the emergence of fast computers in the later parts of the 20th century has led to a renaissance of PCA. The growing numbers of variables (in particular, high-dimensional low sample size problems), non-Gaussian data, and functional data (where the data are curves) are posing exciting challenges to statisticians, and have resulted in new research which extends the classical theory.
I begin with the classical PCA methodology and illustrate the challenges presented by the complex data that we are now able to collect. The main part of the talk focuses on extensions of PCA: the duality of PCA and the Principal Coordinates of Multidimensional Scaling, Sparse PCA, and consistency results relating to principal components, as the dimension grows. We will also look at newer developments such as Principal Component Regression and Supervised PCA, nonlinear PCA and Functional PCA.
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Classification for high-dimensional data 15:10 Fri 1 Apr 11 :: Conference Room Level 7 Ingkarni Wardli :: Associate Prof Inge Koch :: The University of Adelaide
For two-class classification problems Fisher's discriminant rule performs
well in many scenarios provided the dimension, d, is much smaller than the sample
size n. As the dimension increases, Fisher's rule may no longer be
adequate, and can perform as poorly as random guessing.
In this talk we look at new ways of overcoming this poor performance for
high-dimensional data by suitably modifying Fisher's rule, and in particular
we describe the 'Features Annealed Independence Rule (FAIR)? of Fan and Fan
(2008) and a rule based on canonical correlation analysis. I describe some
theoretical developments, and also show analysis of data which illustrate the
performance of these modified rule.
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Comparison of Spectral and Wavelet Estimation of the Dynamic Linear System of a Wade Energy Device 12:10 Mon 2 May 11 :: 5.57 Ingkarni Wardli :: Mohd Aftar :: University of Adelaide
Renewable energy has been one of the main issues nowadays. The implications of fossil energy and nuclear energy along with its limited source have triggered researchers and industries to find another source of renewable energy for example hydro energy, wind energy and also wave energy. In this seminar, I will talk about the spectral estimation and wavelet estimation of a linear dynamical system of motion for a heaving buoy wave energy device. The spectral estimates was based on the Fourier transform, while the wavelet estimate was based on the wavelet transform. Comparisons between two spectral estimates with a wavelet estimate of the amplitude response operator(ARO) for the dynamical system of the wave energy device shows that the wavelet estimate ARO is much better for data with and without noise.
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On parameter estimation in population models 15:10 Fri 6 May 11 :: 715 Ingkarni Wardli :: Dr Joshua Ross :: The University of Adelaide
Essential to applying a mathematical model to a real-world application is
calibrating the model to data. Methods for calibrating population models
often become computationally infeasible when the populations size (more generally
the size of the state space) becomes large, or other complexities such as
time-dependent transition rates, or sampling error, are present. Here we
will discuss the use of diffusion approximations to perform estimation in several
scenarios, with successively reduced assumptions: (i) under the assumption
of stationarity (the process had been evolving for a very long time with
constant parameter values); (ii) transient dynamics (the assumption of stationarity
is invalid, and thus only constant parameter values may be assumed); and, (iii)
time-inhomogeneous chains (the parameters may vary with time) and accounting
for observation error (a sample of the true state is observed).
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When statistics meets bioinformatics 12:10 Wed 11 May 11 :: Napier 210 :: Prof Patty Solomon :: School of Mathematical Sciences
Media...
Bioinformatics is a new field of research which encompasses mathematics, computer science, biology, medicine and the physical sciences. It has arisen from the need to handle and analyse the vast amounts of data being generated by the new genomics technologies. The interface of these disciplines used to be information-poor, but is now information-mega-rich, and statistics plays a central role in processing this information and making it intelligible. In this talk, I will describe a published bioinformatics study which claimed to have developed a simple test for the early detection of ovarian cancer from a blood sample. The US Food and Drug Administration was on the verge of approving the test kits for market in 2004 when demonstrated flaws in the study design and analysis led to its withdrawal. We are still waiting for an effective early biomarker test for ovarian cancer.
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Statistical challenges in molecular phylogenetics 15:10 Fri 20 May 11 :: Mawson Lab G19 lecture theatre :: Dr Barbara Holland :: University of Tasmania
Media...
This talk will give an introduction to the ways that mathematics and statistics gets used in the inference of evolutionary (phylogenetic) trees. Taking a model-based approach to estimating the relationships between species has proven to be an enormously effective, however, there are some tricky statistical challenges that remain. The increasingly plentiful amount of DNA sequence data is a boon, but it is also throwing a spotlight on some of the shortcomings of current best practice particularly in how we (1) assess the reliability of our phylogenetic estimates, and (2) how we choose appropriate models. This talk will aim to give a general introduction this area of research and will also highlight some results from two of my recent PhD students.
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Permeability of heterogeneous porous media - experiments, mathematics and computations 15:10 Fri 27 May 11 :: B.21 Ingkarni Wardli :: Prof Patrick Selvadurai :: Department of Civil Engineering and Applied Mechanics, McGill University
Permeability is a key parameter important to a variety of applications in geological engineering and in the environmental geosciences. The conventional definition of Darcy flow enables the estimation of permeability at different levels of detail. This lecture will focus on the measurement of surface permeability characteristics of a large cuboidal block of Indiana Limestone, using a surface permeameter. The paper discusses the theoretical developments, the solution of the resulting triple integral equations and associated computational treatments that enable the mapping of the near surface permeability of the cuboidal region. This data combined with a kriging procedure is used to develop results for the permeability distribution at the interior of the cuboidal region. Upon verification of the absence of dominant pathways for fluid flow through the cuboidal region, estimates are obtained for the "Effective Permeability" of the cuboid using estimates proposed by Wiener, Landau and Lifschitz, King, Matheron, Journel et al., Dagan and others. The results of these estimates are compared with the geometric mean, derived form the computational estimates.
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Optimal experimental design for stochastic population models 15:00 Wed 1 Jun 11 :: 7.15 Ingkarni Wardli :: Dr Dan Pagendam :: CSIRO, Brisbane
Markov population processes are popular models for studying a wide range of
phenomena including the spread of disease, the evolution of chemical reactions
and the movements of organisms in population networks (metapopulations). Our
ability to use these models effectively can be limited by our knowledge about
parameters, such as disease transmission and recovery rates in an epidemic.
Recently, there has been interest in devising optimal experimental designs for
stochastic models, so that practitioners can collect data in a manner that
maximises the precision of maximum likelihood estimates of the parameters for
these models. I will discuss some recent work on optimal design for a variety
of population models, beginning with some simple one-parameter models where the
optimal design can be obtained analytically and moving on to more complicated
multi-parameter models in epidemiology that involve latent states and
non-exponentially distributed infectious periods. For these more complex
models, the optimal design must be arrived at using computational methods and we
rely on a Gaussian diffusion approximation to obtain analytical expressions for
Fisher's information matrix, which is at the heart of most optimality criteria
in experimental design. I will outline a simple cross-entropy algorithm that
can be used for obtaining optimal designs for these models. We will also
explore the improvements in experimental efficiency when using the optimal
design over some simpler designs, such as the design where observations are
spaced equidistantly in time.
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Inference and optimal design for percolation and general random graph models (Part I) 09:30 Wed 8 Jun 11 :: 7.15 Ingkarni Wardli :: Dr Andrei Bejan :: The University of Cambridge
The problem of optimal arrangement of nodes of a random weighted graph
is discussed in this workshop. The nodes of graphs under study are fixed, but
their edges are random and established according to the so called
edge-probability function. This function is assumed to depend on the weights
attributed to the pairs of graph nodes (or distances between them) and a
statistical parameter. It is the purpose of experimentation to make inference on
the statistical parameter and thus to extract as much information about it as
possible. We also distinguish between two different experimentation scenarios:
progressive and instructive designs.
We adopt a utility-based Bayesian framework to tackle the optimal design problem
for random graphs of this kind. Simulation based optimisation methods, mainly
Monte Carlo and Markov Chain Monte Carlo, are used to obtain the solution. We
study optimal design problem for the inference based on partial observations of
random graphs by employing data augmentation technique. We prove that the
infinitely growing or diminishing node configurations asymptotically represent
the worst node arrangements. We also obtain the exact solution to the optimal
design problem for proximity (geometric) graphs and numerical solution for
graphs with threshold edge-probability functions.
We consider inference and optimal design problems for finite clusters from bond
percolation on the integer lattice $\mathbb{Z}^d$ and derive a range of both
numerical and analytical results for these graphs. We introduce inner-outer
plots by deleting some of the lattice nodes and show that the ÃÂëmostly populatedÃÂÃÂ
designs are not necessarily optimal in the case of incomplete observations under
both progressive and instructive design scenarios. Some of the obtained results
may generalise to other lattices.
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Inference and optimal design for percolation and general random graph models (Part II) 10:50 Wed 8 Jun 11 :: 7.15 Ingkarni Wardli :: Dr Andrei Bejan :: The University of Cambridge
The problem of optimal arrangement of nodes of a random weighted graph
is discussed in this workshop. The nodes of graphs under study are fixed, but
their edges are random and established according to the so called
edge-probability function. This function is assumed to depend on the weights
attributed to the pairs of graph nodes (or distances between them) and a
statistical parameter. It is the purpose of experimentation to make inference on
the statistical parameter and thus to extract as much information about it as
possible. We also distinguish between two different experimentation scenarios:
progressive and instructive designs.
We adopt a utility-based Bayesian framework to tackle the optimal design problem
for random graphs of this kind. Simulation based optimisation methods, mainly
Monte Carlo and Markov Chain Monte Carlo, are used to obtain the solution. We
study optimal design problem for the inference based on partial observations of
random graphs by employing data augmentation technique. We prove that the
infinitely growing or diminishing node configurations asymptotically represent
the worst node arrangements. We also obtain the exact solution to the optimal
design problem for proximity (geometric) graphs and numerical solution for
graphs with threshold edge-probability functions.
We consider inference and optimal design problems for finite clusters from bond
percolation on the integer lattice $\mathbb{Z}^d$ and derive a range of both
numerical and analytical results for these graphs. We introduce inner-outer
plots by deleting some of the lattice nodes and show that the ÃÂÃÂÃÂëmostly populatedÃÂÃÂÃÂÃÂ
designs are not necessarily optimal in the case of incomplete observations under
both progressive and instructive design scenarios. Some of the obtained results
may generalise to other lattices.
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Quantitative proteomics: data analysis and statistical challenges 10:10 Thu 30 Jun 11 :: 7.15 Ingkarni Wardli :: Dr Peter Hoffmann :: Adelaide Proteomics Centre
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Introduction to functional data analysis with applications to proteomics data 11:10 Thu 30 Jun 11 :: 7.15 Ingkarni Wardli :: A/Prof Inge Koch :: School of Mathematical Sciences
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Object oriented data analysis 14:10 Thu 30 Jun 11 :: 7.15 Ingkarni Wardli :: Prof Steve Marron :: The University of North Carolina at Chapel Hill
Object Oriented Data Analysis is the statistical analysis of populations of complex objects. In the special case of Functional Data Analysis, these data objects are curves, where standard Euclidean approaches, such as principal components analysis, have been very successful. Recent developments in medical image analysis motivate the statistical analysis of populations of more complex data objects which are elements of mildly non-Euclidean spaces, such as Lie Groups and Symmetric Spaces, or of strongly non-Euclidean spaces, such as spaces of tree-structured data objects. These new contexts for Object Oriented Data Analysis create several potentially large new interfaces between mathematics and statistics. Even in situations where Euclidean analysis makes sense, there are statistical challenges because of the High Dimension Low Sample Size problem, which motivates a new type of asymptotics leading to non-standard mathematical statistics.
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Object oriented data analysis of tree-structured data objects 15:10 Fri 1 Jul 11 :: 7.15 Ingkarni Wardli :: Prof Steve Marron :: The University of North Carolina at Chapel Hill
The field of Object Oriented Data Analysis has made a lot of
progress on the statistical analysis of the variation in populations
of complex objects. A particularly challenging example of this type
is populations of tree-structured objects. Deep challenges arise,
which involve a marriage of ideas from statistics, geometry, and
numerical analysis, because the space of trees is strongly
non-Euclidean in nature. These challenges, together with three
completely different approaches to addressing them, are illustrated
using a real data example, where each data point is the tree of blood
arteries in one person's brain.
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Modelling computer network topologies through optimisation 12:10 Mon 1 Aug 11 :: 5.57 Ingkarni Wardli :: Mr Rhys Bowden :: University of Adelaide
The core of the Internet is made up of many different computers (called routers) in many different interconnected networks, owned and operated by many different organisations. A popular and important field of study in the past has been "network topology": for instance, understanding which routers are connected to which other routers, or which networks are connected to which other networks; that is, studying and modelling the connection structure of the Internet. Previous study in this area has been plagued by unreliable or flawed experimental data and debate over appropriate models to use. The Internet Topology Zoo is a new source of network data created from the information that network operators make public. In order to better understand this body of network information we would like the ability to randomly generate network topologies resembling those in the zoo. Leveraging previous wisdom on networks produced as a result of optimisation processes, we propose a simple objective function based on possible economic constraints. By changing the relative costs in the objective function we can change the form of the resulting networks, and we compare these optimised networks to a variety of networks found in the Internet Topology Zoo.
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Spectra alignment/matching for the classification of cancer and control patients 12:10 Mon 8 Aug 11 :: 5.57 Ingkarni Wardli :: Mr Tyman Stanford :: University of Adelaide
Proteomic time-of-flight mass spectrometry produces a spectrum based on the peptides (chains of amino acids) in each patientâs serum sample. The spectra contain data points for an x-axis (peptide weight) and a y-axis (peptide frequency/count/intensity). It is our end goal to differentiate cancer (and sub-types) and control patients using these spectra. Before we can do this, peaks in these data must be found and common peptides to different spectra must be found. The data are noisy because of biotechnological variation and calibration error; data points for different peptide weights may in fact be same peptide. An algorithm needs to be employed to find common peptides between spectra, as performing alignment âby handâ is almost infeasible. We borrow methods suggested in the literature by metabolomic gas chromatography-mass spectrometry and extend the methods for our purposes. In this talk I will go over the basic tenets of what we hope to achieve and the process towards this.
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Dealing with the GC-content bias in second-generation DNA sequence data 15:10 Fri 12 Aug 11 :: Horace Lamb :: Prof Terry Speed :: Walter and Eliza Hall Institute
Media...
The field of genomics is currently dealing with an explosion of data from so-called
second-generation DNA sequencing machines. This is creating many challenges and
opportunities for statisticians interested in the area.
In this talk I will outline the technology and the data flood, and move on to one particular
problem where the technology is used: copy-number analysis.
There we find a novel bias, which, if not dealt with properly, can dominate the signal of
interest. I will describe how we think about and summarize it, and go on to identify a
plausible source of this bias, leading up to a way of removing it.
Our approach makes use of the total variation metric on discrete measures, but apart from
this, is largely descriptive.
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Laplace's equation on multiply-connected domains 12:10 Mon 29 Aug 11 :: 5.57 Ingkarni Wardli :: Mr Hayden Tronnolone :: University of Adelaide
Various physical processes take place on multiply-connected domains
(domains with some number of 'holes'), such as the stirring of a fluid
with paddles or the extrusion of material from a die. These systems may
be described by partial differential equations (PDEs). However, standard
numerical methods for solving PDEs are not well-suited to such examples:
finite difference methods are difficult to implement on
multiply-connected domains, especially when the boundaries are irregular
or moving, while finite element methods are computationally expensive.
In this talk I will describe a fast and accurate numerical method for
solving certain PDEs on two-dimensional multiply-connected domains,
considering Laplace's equation as an example. This method takes
advantage of complex variable techniques which allow the solution to be
found with spectral accuracy provided the boundary data is smooth. Other
advantages over traditional numerical methods will also be discussed.
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Alignment of time course gene expression data sets using Hidden Markov Models 12:10 Mon 5 Sep 11 :: 5.57 Ingkarni Wardli :: Mr Sean Robinson :: University of Adelaide
Time course microarray experiments allow for insight into biological processes by measuring gene expression over a time period of interest. This project is concerned with time course data from a microarray experiment conducted on a particular variety of grapevine over the development of the grape berries at a number of different vineyards in South Australia. The aim of the project is to construct a methodology for combining the data from the different vineyards in order to obtain more precise estimates of the underlying behaviour of the genes over the development process. A major issue in doing so is that the rate of development of the grape berries is different at different vineyards.
Hidden Markov models (HMMs) are a well established methodology for modelling time series data in a number of domains and have been previously used for gene expression analysis. Modelling the grapevine data presents a unique modelling issue, namely the alignment of the expression profiles needed to combine the data from different vineyards. In this seminar, I will describe our problem, review HMMs, present an extension to HMMs and show some preliminary results modelling the grapevine data.
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Statistical analysis of metagenomic data from the microbial community involved in industrial bioleaching 12:10 Mon 19 Sep 11 :: 5.57 Ingkarni Wardli :: Ms Susana Soto-Rojo :: University of Adelaide
In the last two decades heap bioleaching has become established as a successful commercial option for recovering copper from low-grade secondary sulfide ores. Genetics-based approaches have recently been employed in the task of characterizing mineral processing bacteria. Data analysis is a key issue and thus the implementation of adequate mathematical and statistical tools is of fundamental importance to draw reliable conclusions. In this talk I will give a recount of two specific problems that we have been working on. The first regarding experimental design and the latter on modeling composition and activity of the microbial consortium.
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Can statisticians do better than random guessing? 12:10 Tue 20 Sep 11 :: Napier 210 :: A/Prof Inge Koch :: School of Mathematical Sciences
In the finance or credit risk area, a bank may want to assess whether a client is going to default, or be able to meet the repayments. In the assessment of benign or malignant tumours, a correct diagnosis is required. In these and similar examples, we make decisions based on data. The classical t-tests provide a tool for making such decisions. However, many modern data sets have more variables than observations, and the classical rules may not be any better than random guessing. We consider Fisher's rule for classifying data into two groups, and show that it can break down for high-dimensional data. We then look at ways of overcoming some of the weaknesses of the classical rules, and I show how these "post-modern" rules perform in practice.
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Estimating transmission parameters for the swine flu pandemic 15:10 Fri 23 Sep 11 :: 7.15 Ingkarni Wardli :: Dr Kathryn Glass :: Australian National University
Media...
Following the onset of a new strain of influenza with pandemic potential, policy makers need specific advice on how fast the disease is spreading, who is at risk, and what interventions are appropriate for slowing transmission. Mathematical models play a key role in comparing interventions and identifying the best response, but models are only as good as the data that inform them. In the early stages of the 2009 swine flu outbreak, many researchers estimated transmission parameters - particularly the reproduction number - from outbreak data. These estimates varied, and were often biased by data collection methods, misclassification of imported cases or as a result of early stochasticity in case numbers. I will discuss a number of the pitfalls in achieving good quality parameter estimates from early outbreak data, and outline how best to avoid them.
One of the early indications from swine flu data was that children were disproportionately responsible for disease spread. I will introduce a new method for estimating age-specific transmission parameters from both outbreak and seroprevalence data. This approach allows us to take account of empirical data on human contact patterns, and highlights the need to allow for asymmetric mixing matrices in modelling disease transmission between age groups. Applied to swine flu data from a number of different countries, it presents a consistent picture of higher transmission from children.
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Statistical analysis of school-based student performance data 12:10 Mon 10 Oct 11 :: 5.57 Ingkarni Wardli :: Ms Jessica Tan :: University of Adelaide
Join me in the journey of being a statistician for 15 minutes of your day (if you are not already one) and experience the task of data cleaning without having to get your own hands dirty. Most of you may have sat the Basic Skills Tests when at school or know someone who currently has to do the NAPLAN (National Assessment Program - Literacy and Numeracy) tests. Tests like these assess student progress and can be used to accurately measure school performance. In trying to answer the research question: "what conclusions about student progress and school performance can be drawn from NAPLAN data or data of a similar nature, using mathematical and statistical modelling and analysis techniques?", I have uncovered some interesting results about the data in my initial data analysis which I shall explain in this talk.
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Statistical modelling for some problems in bioinformatics 11:10 Fri 14 Oct 11 :: B.17 Ingkarni Wardli :: Professor Geoff McLachlan :: The University of Queensland
Media...
In this talk we consider some statistical analyses of data arising in
bioinformatics. The problems include the detection of differential
expression in microarray gene-expression data, the clustering of
time-course gene-expression data and, lastly, the analysis of
modern-day cytometric data. Extensions are considered to the procedures
proposed for these three problems in McLachlan et al. (Bioinformatics, 2006),
Ng et al. (Bioinformatics, 2006), and Pyne et al. (PNAS, 2009), respectively.
The latter references are available at http://www.maths.uq.edu.au/~gjm/.
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On the role of mixture distributions in the modelling of heterogeneous data 15:10 Fri 14 Oct 11 :: 7.15 Ingkarni Wardli :: Prof Geoff McLachlan :: University of Queensland
Media...
We consider the role that finite mixture distributions have played in the modelling of heterogeneous data, in particular for clustering continuous data via mixtures of normal distributions. A very brief history is given starting with the seminal papers by Day and Wolfe in the sixties before the appearance of the EM algorithm. It was the publication in 1977 of the latter algorithm by Dempster, Laird, and Rubin that greatly stimulated interest in the use of finite mixture distributions to model heterogeneous data. This is because the fitting of mixture models by maximum likelihood is a classic example of a problem that is simplified considerably by the EM's conceptual unification of maximum likelihood estimation from data that can be viewed as being incomplete. In recent times there has been a proliferation of applications in which the number of experimental units n is comparatively small but the underlying dimension p is extremely large as, for example, in microarray-based genomics and other high-throughput experimental approaches. Hence there has been increasing attention given not only in bioinformatics and machine learning, but also in mainstream statistics, to the analysis of complex data in this situation where n is small relative to p. The latter part of the talk shall focus on the modelling of such high-dimensional data using mixture distributions.
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Metric geometry in data analysis 13:10 Fri 11 Nov 11 :: B.19 Ingkarni Wardli :: Dr Facundo Memoli :: University of Adelaide
The problem of object matching under invariances can be
studied using certain tools from metric geometry. The central idea is
to regard
objects as metric spaces (or metric measure spaces). The type of
invariance that one wishes to have in the matching is encoded by the
choice of the metrics with which one endows the objects. The standard
example is matching objects in Euclidean space under rigid isometries:
in this
situation one would endow the objects with the Euclidean metric. More
general scenarios are possible in which the desired invariance cannot
be reflected by the preservation of an ambient space metric. Several
ideas due to M. Gromov are useful for approaching this problem. The
Gromov-Hausdorff distance is a natural candidate for doing this.
However, this metric leads to very hard combinatorial optimization
problems and it is difficult to relate to previously reported
practical approaches to the problem of object matching. I will discuss
different variations of these ideas, and in particular will show a
construction of an L^p version of the Gromov-Hausdorff metric, called
the Gromov-Wassestein distance, which is based on mass transportation
ideas. This new metric directly leads to quadratic optimization
problems on continuous variables with linear constraints.
As a consequence of establishing several lower bounds, it turns out
that several invariants of metric measure spaces turn out to be
quantitatively stable in the GW sense. These invariants provide
practical tools for the discrimination of shapes and connect the GW
ideas to a number of pre-existing approaches.
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Fluid flows in microstructured optical fibre fabrication 15:10 Fri 25 Nov 11 :: B.17 Ingkarni Wardli :: Mr Hayden Tronnolone :: University of Adelaide
Optical fibres are used extensively in modern telecommunications as they allow the transmission of information at high speeds. Microstructured optical fibres are a relatively new fibre design in which a waveguide for light is created by a series of air channels running along the length of the material. The flexibility of this design allows optical fibres to be created with adaptable (and previously unrealised) optical properties. However, the fluid flows that arise during fabrication can greatly distort the geometry, which can reduce the effectiveness of a fibre or render it useless. I will present an overview of the manufacturing process and highlight the difficulties. I will then focus on surface-tension driven deformation of the macroscopic version of the fibre extruded from a reservoir of molten glass, occurring during fabrication, which will be treated as a two-dimensional Stokes flow problem. I will outline two different complex-variable numerical techniques for solving this problem along with comparisons of the results, both to other models and to experimental data.
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Financial risk measures - the theory and applications of backward stochastic difference/differential equations with respect to the single jump process 12:10 Mon 26 Mar 12 :: 5.57 Ingkarni Wardli :: Mr Bin Shen :: University of Adelaide
Media...
This is my PhD thesis submitted one month ago. Chapter 1 introduces the backgrounds of the research fields. Then each chapter is a published or an accepted paper.
Chapter 2, to appear in Methodology and Computing in Applied Probability, establishes the theory of Backward Stochastic Difference Equations with respect to the single jump process in discrete time.
Chapter 3, published in Stochastic Analysis and Applications, establishes the theory of Backward Stochastic Differential Equations with respect to the single jump process in continuous time.
Chapter 2 and 3 consist of Part I Theory.
Chapter 4, published in Expert Systems With Applications, gives some examples about how to measure financial risks by the theory established in Chapter 2.
Chapter 5, accepted by Journal of Applied Probability, considers the question of an optimal transaction between two investors to minimize their risks. It's the applications of the theory established in Chapter 3.
Chapter 4 and 5 consist of Part II Applications.
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Spatial-point data sets and the Polya distribution 15:10 Fri 27 Apr 12 :: B.21 Ingkarni Wardli :: Dr Benjamin Binder :: The University of Adelaide
Media...
Spatial-point data sets, generated from a wide range of
physical systems and mathematical
models, can be analyzed by counting the number of objects in equally
sized bins. We find that the bin
counts are related to the Polya distribution. New indexes are
developed which quantify whether or not a
spatial data set is at its most evenly distributed state. Using three
case studies (Lagrangian fluid particles in chaotic laminar
flows, cellular automata agents in discrete models, and biological
cells within colonies),
we calculate the indexes and predict the spatial-state of the system.
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A brief introduction to Support Vector Machines 12:30 Mon 4 Jun 12 :: 5.57 Ingkarni Wardli :: Mr Tyman Stanford :: University of Adelaide
Media...
Support Vector Machines (SVMs) are used in a variety of contexts for a range of purposes including regression, feature selection and classification. To convey the basic principles of SVMs, this presentation will focus on the application of SVMs to classification. Classification (or discrimination), in a statistical sense, is supervised model creation for the purpose of assigning future observations to a group or class. An example might be determining healthy or diseased labels to patients from p characteristics obtained from a blood sample.
While SVMs are widely used, they are most successful when the data have one or more of the following properties:
The data are not consistent with a standard probability distribution.
The number of observations, n, used to create the model is less than the number of predictive features, p. (The so-called small-n, big-p problem.)
The decision boundary between the classes is likely to be non-linear in the feature space.
I will present a short overview of how SVMs are constructed, keeping in mind their purpose. As this presentation is part of a double post-grad seminar, I will keep it to a maximum of 15 minutes.
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Comparison of spectral and wavelet estimators of transfer function for linear systems 12:10 Mon 18 Jun 12 :: B.21 Ingkarni Wardli :: Mr Mohd Aftar Abu Bakar :: University of Adelaide
Media...
We compare spectral and wavelet estimators of the response amplitude operator (RAO) of a linear system, with various input signals and added noise scenarios. The comparison is based on a model of a heaving buoy wave energy device (HBWED), which oscillates vertically as a single mode of vibration linear system.
HBWEDs and other single degree of freedom wave energy devices such as the oscillating wave surge convertors (OWSC) are currently deployed in the ocean, making single degree of freedom wave energy devices important systems to both model and analyse in some detail. However, the results of the comparison relate to any linear system.
It was found that the wavelet estimator of the RAO offers no advantage over the spectral estimators if both input and response time series data are noise free and long time series are available. If there is noise on only the response time series, only the wavelet estimator or the spectral estimator that uses the cross-spectrum of the input and response signals in the numerator should be used. For the case of noise on only the input time series, only the spectral estimator that uses the cross-spectrum in the denominator gives a sensible estimate of the RAO. If both the input and response signals are corrupted with noise, a modification to both the input and response spectrum estimates can provide a good estimator of the RAO. However, a combination of wavelet and spectral methods is introduced as an alternative RAO estimator.
The conclusions apply for autoregressive emulators of sea surface elevation, impulse, and pseudorandom binary sequences (PRBS) inputs. However, a wavelet estimator is needed in the special case of a chirp input where the signal has a continuously varying frequency.
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AFL Tipping isn't all about numbers and stats...or is it..... 12:10 Mon 6 Aug 12 :: B.21 Ingkarni Wardli :: Ms Jessica Tan :: University of Adelaide
Media...
The result of an AFL game is always unpredictable - we all know that. Hence why we discuss the weekend's upsets and the local tipping competition as part of the "water-cooler and weekend" conversation on a Monday morning. Different people use various weird and wonderful techniques or criteria to predict the winning team. With readily available data, I will investigate and compare various strategies and define a measure of the hardness of a round (full acknowledgements will be made in my presentation). Hopefully this will help me for next year's tipping competition...
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Star Wars Vs The Lord of the Rings: A Survival Analysis 12:10 Mon 27 Aug 12 :: B.21 Ingkarni Wardli :: Mr Christopher Davies :: University of Adelaide
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Ever wondered whether you are more likely to die in the Galactic Empire or Middle Earth? Well this is the postgraduate seminar for you!
I'll be attempting to answer this question using survival analysis, the statistical method of choice for investigating time to event data.
Spoiler Warning: This talk will contain references to the deaths of characters in the above movie sagas.
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Principal Component Analysis (PCA) 12:30 Mon 3 Sep 12 :: B.21 Ingkarni Wardli :: Mr Lyron Winderbaum :: University of Adelaide
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Principal Component Analysis (PCA) has become something of a buzzword recently in a number of disciplines including the gene expression and facial recognition. It is a classical, and fundamentally simple, concept that has been around since the early 1900's, its recent popularity largely due to the need for dimension reduction techniques in analyzing high dimensional data that has become more common in the last decade, and the availability of computing power to implement this. I will explain the concept, prove a result, and give a couple of examples. The talk should be accessible to all disciplines as it (should?) only assume first year linear algebra, the concept of a random variable, and covariance.
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Epidemic models in socially structured populations: when are simple models too simple? 14:00 Thu 25 Oct 12 :: 5.56 Ingkarni Wardli :: Dr Lorenzo Pellis :: The University of Warwick
Both age and household structure are recognised as important heterogeneities affecting epidemic spread of infectious pathogens, and many models exist nowadays that include either or both forms of heterogeneity. However, different models may fit aggregate epidemic data equally well and nevertheless lead to different predictions of public health interest. I will here present an overview of stochastic epidemic models with increasing complexity in their social structure, focusing in particular on households models. For these models, I will present recent results about the definition and computation of the basic reproduction number R0 and its relationship with other threshold parameters. Finally, I will use these results to compare models with no, either or both age and household structure, with the aim of quantifying the conditions under which each form of heterogeneity is relevant and therefore providing some criteria that can be used to guide model design for real-time predictions.
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The space of cubic rational maps 13:10 Fri 26 Oct 12 :: Engineering North 218 :: Mr Alexander Hanysz :: University of Adelaide
For each natural number d, the space of rational maps of degree d on the Riemann sphere has the structure of a complex manifold. The topology of these manifolds has been extensively studied. The recent development of Oka theory raises some new and interesting questions about their complex structure. We apply geometric invariant theory to the degree 3 case, studying a double action of the Mobius group on the space of cubic rational maps. We show that the categorical quotient is C, and that the space of cubic rational maps enjoys the holomorphic flexibility properties of strong dominability and C-connectedness.
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Spatiotemporally Autoregressive Partially Linear Models with Application to the Housing Price Indexes of the United States 12:10 Mon 12 Nov 12 :: B.21 Ingkarni Wardli :: Ms Dawlah Alsulami :: University of Adelaide
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We propose a Spatiotemporal Autoregressive Partially Linear Regression ( STARPLR) model for data observed irregularly over space and regularly in time. The model is capable of catching possible non linearity and nonstationarity in space by coefficients to depend on locations. We suggest two-step procedure to estimate both the coefficients and the unknown function, which is readily implemented and can be computed even for large spatio-temoral data sets. As an illustration, we apply our model to analyze the 51 States' House Price Indexes (HPIs) in USA.
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An Oka principle for equivariant isomorphisms 12:10 Fri 3 May 13 :: Ingkarni Wardli B19 :: A/Prof Finnur Larusson :: University of Adelaide
I will discuss new joint work with Frank Kutzschebauch (Bern) and Gerald Schwarz (Brandeis). Let $G$ be a reductive complex Lie group acting holomorphically on Stein manifolds $X$ and $Y$, which are locally $G$-biholomorphic over a common categorical quotient $Q$. When is there a global $G$-biholomorphism $X\to Y$?
In a situation that we describe, with some justification, as generic, we prove that the obstruction to solving this local-to-global problem is topological and provide sufficient conditions for it to vanish. Our main tool is the equivariant version of Grauert's Oka principle due to Heinzner and Kutzschebauch.
We prove that $X$ and $Y$ are $G$-biholomorphic if $X$ is $K$-contractible, where $K$ is a maximal compact subgroup of $G$, or if there is a $G$-diffeomorphism $X\to Y$ over $Q$, which is holomorphic when restricted to each fibre of the quotient map $X\to Q$. When $G$ is abelian, we obtain stronger theorems. Our results can be interpreted as instances of the Oka principle for sections of the sheaf of $G$-biholomorphisms from $X$ to $Y$ over $Q$. This sheaf can be badly singular, even in simply defined examples.
Our work is in part motivated by the linearisation problem for actions on $\C^n$. It follows from one of our main results that a holomorphic $G$-action on $\C^n$, which is locally $G$-biholomorphic over a common quotient to a generic linear action, is linearisable.
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Colour 12:10 Mon 13 May 13 :: B.19 Ingkarni Wardli :: Lyron Winderbaum :: University of Adelaide
Media...
Colour is a powerful tool in presenting data, but it can be tricky to choose just the right colours to represent your data honestly - do the colours used in your heatmap overemphasise the differences between particular values over others? does your choice of colours overemphasize one when they should be represented as equal? etc. All these questions are fundamentally based in how we perceive colour. There has been alot of research into how we perceive colour in the past century, and some interesting results. I will explain how a `standard observer' was found empirically and used to develop an absolute reference standard for colour in 1931. How although the common Red-Green-Blue representation of colour is useful and intuitive, distances between colours in this space do not reflect our perception of difference between colours and how alternative, perceptually focused colourspaces where introduced in 1976. I will go on to explain how these results can be used to provide simple mechanisms by which to choose colours that satisfy particular properties such as being equally different from each other, or being linearly more different in sequence, or maintaining such properties when transferred to greyscale, or for a colourblind person.
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Progress in the prediction of buoyancy-affected turbulence 15:10 Fri 17 May 13 :: B.18 Ingkarni Wardli :: Dr Daniel Chung :: University of Melbourne
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Buoyancy-affected turbulence represents a significant challenge to our
understanding, yet it dominates many important flows that occur in the
ocean and atmosphere. The presentation will highlight some recent progress
in the characterisation, modelling and prediction of buoyancy-affected
turbulence using direct and large-eddy simulations, along with implications
for the characterisation of mixing in the ocean and the low-cloud feedback
in the atmosphere. Specifically, direct numerical simulation data of
stratified turbulence will be employed to highlight the importance of
boundaries in the characterisation of turbulent mixing in the ocean. Then,
a subgrid-scale model that captures the anisotropic character of stratified
mixing will be developed for large-eddy simulation of buoyancy-affected
turbulence. Finally, the subgrid-scale model is utilised to perform a
systematic large-eddy simulation investigation of the archetypal low-cloud
regimes, from which the link between the lower-tropospheric stability
criterion and the cloud fraction interpreted.
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Coincidences 14:10 Mon 20 May 13 :: 7.15 Ingkarni Wardli :: A/Prof. Robb Muirhead :: School of Mathematical Sciences
Media...
This is a lighthearted (some would say content-free) talk about coincidences, those surprising concurrences of events that are often perceived as meaningfully related, with no apparent causal connection. Time permitting, it will touch on topics like:
Patterns in data and the dangers of looking for patterns, unspecified ahead of time, and trying to "explain" them; e.g. post hoc subgroup analyses, cancer clusters, conspiracy theories ...
Matching problems; e.g. the birthday problem and extensions
People who win a lottery more than once -- how surprised should we really be? What's the question we should be asking?
When you become familiar with a new word, and see it again soon afterwards, how surprised should you be?
Caution: This is a shortened version of a talk that was originally prepared for a group of non-mathematicians and non-statisticians, so it's mostly non-technical. It probably does not contain anything you don't already know -- it will be an amazing coincidence if it does!
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News matching "Analysis of categorical data"
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ARC Grant successes The School of Mathematical Sciences has again had outstanding success in the ARC Discovery and Linkage Projects schemes.
Congratulations to the following staff for their success in the Discovery Project scheme:
Prof Nigel Bean, Dr Josh Ross, Prof Phil Pollett, Prof Peter Taylor, New methods for improving active adaptive management in biological systems, $255,000 over 3 years;
Dr Josh Ross, New methods for integrating population structure and stochasticity into models of disease dynamics, $248,000 over three years;
A/Prof Matt Roughan, Dr Walter Willinger, Internet traffic-matrix synthesis, $290,000 over three years;
Prof Patricia Solomon, A/Prof John Moran, Statistical methods for the analysis of critical care data, with application to the Australian and New Zealand Intensive Care Database, $310,000 over 3 years;
Prof Mathai Varghese, Prof Peter Bouwknegt, Supersymmetric quantum field theory, topology and duality, $375,000 over 3 years;
Prof Peter Taylor, Prof Nigel Bean, Dr Sophie Hautphenne, Dr Mark Fackrell, Dr Malgorzata O'Reilly, Prof Guy Latouche, Advanced matrix-analytic methods with applications, $600,000 over 3 years.
Congratulations to the following staff for their success in the Linkage Project scheme:
Prof Simon Beecham, Prof Lee White, A/Prof John Boland, Prof Phil Howlett, Dr Yvonne Stokes, Mr John Wells, Paving the way: an experimental approach to the mathematical modelling and design of permeable pavements, $370,000 over 3 years;
Dr Amie Albrecht, Prof Phil Howlett, Dr Andrew Metcalfe, Dr Peter Pudney, Prof Roderick Smith, Saving energy on trains - demonstration, evaluation, integration, $540,000 over 3 years
Posted Fri 29 Oct 10.
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New Fellow of the Australian Academy of Science Professor Mathai Varghese, Professor of Pure Mathematics and ARC Professorial Fellow within the School of Mathematical Sciences, was elected to the Australian Academy of Science. Professor Varghese's citation read "for his distinguished for his work in geometric analysis involving the topology of manifolds, including the Mathai-Quillen formalism in topological field theory.". Posted Tue 30 Nov 10.
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ARC Grant Success Congratulations to the following staff who were successful in securing funding from the Australian Research Council Discovery Projects Scheme. Associate Professor Finnur Larusson awarded $270,000 for his project Flexibility and symmetry in complex geometry; Dr Thomas Leistner, awarded $303,464 for his project Holonomy groups in Lorentzian geometry, Professor Michael Murray Murray and Dr Daniel Stevenson (Glasgow), awarded $270,000 for their project Bundle gerbes: generalisations and applications; Professor Mathai Varghese, awarded $105,000 for his project Advances in index theory and Prof Anthony Roberts and Professor Ioannis Kevrekidis (Princeton) awarded $330,000 for their project Accurate modelling of large multiscale dynamical systems for engineering and scientific
simulation and analysis Posted Tue 8 Nov 11.
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Publications matching "Analysis of categorical data"
| Publications |
Inversion of analytically perturbed linear operators that are singular at the origin Howlett, P; Avrachenkov, K; Pearce, Charles; Ejov, V, Journal of Mathematical Analysis and Applications 353 (68–84) 2009 |
Portfolio risk minimization and differential games Elliott, Robert; Siu, T, Nonlinear Analysis-Theory Methods & Applications In Press (–) 2009 |
Schlicht Envelopes of Holomorphy and Foliations by Lines Larusson, Finnur; Shafikov, R, Journal of Geometric Analysis 19 (373–389) 2009 |
A total probability approach to flood frequency analysis in tidal river reaches Need, Steven; Lambert, Martin; Metcalfe, Andrew, World Environmental and Water Resources Congress 2008 Ahupua'a, Honolulu 12/05/08 |
CleanBGP: Verifying the consistency of BGP data Flavel, Ashley; Maennel, Olaf; Chiera, Belinda; Roughan, Matthew; Bean, Nigel, International Network Management Workshop, Orlando, Florida 19/10/08 |
Energy balanced data gathering in WSNs with grid topologies Chen, J; Shen, Hong; Tian, Hui, 7th International Conference on Grid and Cooperative Computing, China 24/10/08 |
Quantitative analysis ofincorrectly-configured bogon-filter detection Arnold, Jonathan; Maennel, Olaf; Flavel, Ashley; McMahon, Jeremy; Roughan, Matthew, Australasian Telecommunication Networks and Applications Conference, Adelaide 07/12/08 |
A non-linear filter Elliott, Robert; Leung, H; Deng, J, Stochastic Analysis and Applications 26 (856–862) 2008 |
Frequency analysis of rainfall and streamflow extremes accounting for seasonal and climatic partitions Leonard, Michael; Metcalfe, Andrew; Lambert, Martin, Journal of Hydrology 348 (135–147) 2008 |
Nonlinear transient heat conduction problems for a class of inhomogeneous anisotropic materials by BEM Azis, Mohammad; Clements, David, Engineering Analysis With Boundary Elements 32 (1054–1060) 2008 |
Internet traffic and multiresolution analysis Zhang, Y; Ge, Z; Diggavi, S; Mao, Z; Roughan, Matthew; Vaishampayan, V; Willinger, W; Zhang, Y, chapter in Markov Processes and Related Topics: A Festschrift for Thomas G. Kurtz (Institute of Mathematical Statistic) 215–234, 2008 |
Data fusion without data fusion: localization and tracking without sharing sensitive information Roughan, Matthew; Arnold, Jonathan, Information, Decision and Control 2007, Adelaide, Australia 12/02/07 |
Aspects of Dirac operators in analysis Eastwood, Michael; Ryan, J, Milan Journal of Mathematics 75 (91–116) 2007 |
Gene expression analysis of multiple gastrointestinal regions reveals activation of common cell regulatory pathways following cytotoxic chemotherapy Bowen, Joanne; Gibson, Rachel; Tsykin, Anna; Stringer, Andrea Marie; Logan, Richard; Keefe, Dorothy, International Journal of Cancer 121 (1847–1856) 2007 |
Nonclassical symmetry solutions for reaction-diffusion equations with explicity spatial dependence Hajek, Bronwyn; Edwards, M; Broadbridge, P; Williams, G, Nonlinear Analysis-Theory Methods & Applications 67 (2541–2552) 2007 |
Optimal multilinear estimation of a random vector under constraints of casualty and limited memory Howlett, P; Torokhti, Anatoli; Pearce, Charles, Computational Statistics & Data Analysis 52 (869–878) 2007 |
Statistics in review; Part 1: graphics, data summary and linear models Moran, John; Solomon, Patricia, Critical care and Resuscitation 9 (81–90) 2007 |
Statistics in review; Part 2: Generalised linear models, time-to-event and time-series analysis, evidence synthesis and clinical trials Moran, John; Solomon, Patricia, Critical care and Resuscitation 9 (187–197) 2007 |
The solution of a free boundary problem related to environmental management systems Elliott, Robert; Filinkov, Alexei, Stochastic Analysis and Applications 25 (1189–1202) 2007 |
Experimental Design and Analysis of Microarray Data Wilson, C; Tsykin, Anna; Wilkinson, Christopher; Abbott, C, chapter in Bioinformatics (Elsevier Ltd) 1–36, 2006 |
Is BGP update storm a sign of trouble: Observing the internet control and data planes during internet worms Roughan, Matthew; Li, J; Bush, R; Mao, Z; Griffin, T, SPECTS 2006, Calgary, Canada 31/07/06 |
Watching data streams toward a multi-homed sink under routing changes introduced by a BGP beacon Li, J; Bush, R; Mao, Z; Griffin, T; Roughan, Matthew; Stutzbach, D; Purpus, E, PAM2006, Adelaide, Australia 30/03/06 |
A Markov analysis of social learning and adaptation Wheeler, Scott; Bean, Nigel; Gaffney, Janice; Taylor, Peter, Journal of Evolutionary Economics 16 (299–319) 2006 |
Data-recursive smoother formulae for partially observed discrete-time Markov chains Elliott, Robert; Malcolm, William, Stochastic Analysis and Applications 24 (579–597) 2006 |
Mathematical analysis of an extended mumford-shah model for image segmentation Tao, Trevor; Crisp, David; Van Der Hoek, John, Journal of Mathematical Imaging and Vision 24 (327–340) 2006 |
Methodology in meta-analysis: a study from critical care meta-analytic practice Moran, John; Solomon, Patricia; Warn, D, Health Services and Outcomes Research Methodology 5 (207–226) 2006 |
On the indentation of an inhomogeneous anisotropic elastic material by multiple straight rigid punches Clements, David; Ang, W, Engineering Analysis With Boundary Elements 30 (284–291) 2006 |
Optimal linear estimation and data fusion Elliott, Robert; Van Der Hoek, John, IEEE Transactions on Automatic Control 51 (686–689) 2006 |
Secure distributed data-mining and its application to large-scale network measurements Roughan, Matthew; Zhang, Y, Computer Communication Review 36 (7–14) 2006 |
Stochastic volatility model with filtering Elliott, Robert; MIao, H, Stochastic Analysis and Applications 24 (661–683) 2006 |
The influence of urban land-use on non-motorised transport casualties Wedagama, D; Bird, R; Metcalfe, Andrew, Accident Analysis and Prevention 38 (1049–1057) 2006 |
Optimal estimation of a random signal from partially missed data Torokhti, Anatoli; Howlett, P; Pearce, Charles, EUSIPCO 2006, Florence, Italy 04/09/06 |
Three-dimensional flow due to a microcantilever oscillating near a wall: an unsteady slender-body analysis Clarke, Richard; Jensen, O; Billingham, J; Williams, P, Proceedings of the Royal Society of London Series A-Mathematical Physical and Engineering Sciences 462 (913–933) 2006 |
Analysis of a practical control policy for water storage in two connected dams Howlett, P; Piantadosi, J; Pearce, Charles, chapter in Continuous optimization: Current trends and modern applications (Springer) 435–450, 2005 |
Diversity sensitivity and multimodal Bayesian statistical analysis by relative entropy Leipnik, R; Pearce, Charles, The ANZIAM Journal 47 (277–287) 2005 |
Elastic plastic analysis of shallow shells - A new approach Mazumdar, Jagan; Ghosh, Abir; Hewitt, J; Bhattacharya, P, The ANZIAM Journal 47 (121–130) 2005 |
Hidden Markov chain filtering for a jump diffusion model Wu, P; Elliott, Robert, Stochastic Analysis and Applications 23 (153–163) 2005 |
Hidden Markov filter estimation of the occurrence time of an event in a financial market Elliott, Robert; Tsoi, A, Stochastic Analysis and Applications 23 (1165–1177) 2005 |
Meta-analysis of controlled trials of ventilator therapy in acute lung injury and acute respiratory distress syndrome: an alternative perspective Moran, John; Bersten, A; Solomon, Patricia, Intensive Care Medicine 31 (227–235) 2005 |
Optimal recursive estimation of raw data Torokhti, Anatoli; Howlett, P; Pearce, Charles, Annals of Operations Research 133 (285–302) 2005 |
Smoothly parameterized ech cohomology of complex manifolds Bailey, T; Eastwood, Michael; Gindikin, S, Journal of Geometric Analysis 15 (9–23) 2005 |
Image processing of finite size rat retinal ganglion cells using multifractal and local connected fractal analysis Jelinek, H; Cornforth, D; Roberts, Anthony John; Landini, G; Bourke, P; Iorio, A, chapter in AI 2004: Advances in Artificial Intelligence (Springer) 961–966, 2005 |
On the analysis of a case-control study with differential measurement error Glonek, Garique, 20th International Workshop on Statistical Modelling, Sydney, Australia 10/07/05 |
Dixmier traces as singular symmetric functionals and applications to measurable operators Lord, Steven; Sedaev, A; Sukochev, F, Journal of Functional Analysis 224 (72–106) 2005 |
Filtering, smoothing and M-ary detection with discrete time poisson observations Elliott, Robert; Malcolm, William; Aggoun, L, Stochastic Analysis and Applications 23 (939–952) 2005 |
Finite-dimensional filtering and control for continuous-time nonlinear systems Elliott, Robert; Aggoun, L; Benmerzouga, A, Stochastic Analysis and Applications 22 (499–505) 2005 |
Nonlinear analysis of rubber-based polymeric materials with thermal relaxation models Melnik, R; Strunin, D; Roberts, Anthony John, Numerical Heat Transfer Part A-Applications 47 (549–569) 2005 |
Smoothly parameterized Cech cohomology of complex manifolds Bailey, T; Eastwood, Michael; Gindikin, S, Journal of Geometric Analysis 15 (9–23) 2005 |
Combining routing and traffic data for detection of IP forwarding anomalies Roughan, Matthew; Griffin, T; Mao, M; Greenberg, A; Freeman, B, Sigmetrics - Performance 2004, New York, USA 12/06/04 |
IP forwarding anomalies and improving their detection using multiple data sources Roughan, Matthew; Griffin, T; Mao, M; Greenberg, A; Freeman, B, SIGCOMM 2004, Oregon, USA 30/08/04 |
A deterministic discretisation-step upper bound for state estimation via Clark transformations Malcolm, William; Elliott, Robert; Van Der Hoek, John, J.A.M.S.A. Journal of Applied Mathematics and Stochastic Analysis 2004 (371–384) 2004 |
A sufficient condition for the uniform exponential stability of time-varying systems with noise Grammel, G; Maizurna, Isna, Nonlinear Analysis-Theory Methods & Applications 56 (951–960) 2004 |
Gerbes, Clifford Modules and the index theorem Murray, Michael; Singer, Michael, Annals of Global Analysis and Geometry 26 (355–367) 2004 |
Reactions to genetically modified food crops and how perception of risks and benefits influences consumers' information gathering Wilson, Carlene; Evans, G; Leppard, Phillip; Syrette, J, Risk Analysis 24 (1311–1321) 2004 |
The data processing inequality and stochastic resonance McDonnell, Mark; Stocks, N; Pearce, Charles; Abbott, Derek, Noise in Complex Systems and Stochastic Dynamics, Santa Fe, New Mexico, USA 01/06/03 |
A dual-reciprocity boundary element method for a class of elliptic boundary value problems for non-homogenous anisotropic media Ang, W; Clements, David; Vahdati, N, Engineering Analysis With Boundary Elements 27 (49–55) 2003 |
Compact Khler surfaces with trivial canonical bundle Buchdahl, Nicholas, Annals of Global Analysis and Geometry 23 (189–204) 2003 |
Complex analysis and the Funk transform Bailey, T; Eastwood, Michael; Gover, A; Mason, L, Journal of the Korean Mathematical Society 40 (577–593) 2003 |
Exponential stability and partial averaging Grammel, G; Maizurna, Isna, Journal of Mathematical Analysis and Applications 283 (276–286) 2003 |
Hyperbolic monopoles and holomorphic spheres Murray, Michael; Norbury, Paul; Singer, Michael, Annals of Global Analysis and Geometry 23 (101–128) 2003 |
Method of best successive approximations for nonlinear operators Torokhti, Anatoli; Howlett, P; Pearce, Charles, Journal of Computational Analysis and Applications 5 (299–312) 2003 |
On nonlinear operator approximation with preassigned accuracy Howlett, P; Pearce, Charles; Torokhti, Anatoli, Journal of Computational Analysis and Applications 5 (273–297) 2003 |
Rumours, epidemics, and processes of mass action: Synthesis and analysis Dickinson, Rowland; Pearce, Charles, Mathematical and Computer Modelling 38 (1157–1167) 2003 |
Stochastic resonance and data processing inequality McDonnell, Mark; Stocks, N; Pearce, Charles; Abbott, Derek, Electronics Letters 39 (1287–1288) 2003 |
Resampling-based multiple testing for microarray data analysis (Invited discussion of paper by Ge, Dudoit and Speed) Glonek, Garique; Solomon, Patricia, Test 12 (50–53) 2003 |
An analysis of noise enhanced information transmission in an array of comparators McDonnell, Mark; Abbott, Derek; Pearce, Charles, Microelectronics Journal 33 (1079–1089) 2002 |
Approximating spectral invariants of Harper operators on graphs Varghese, Mathai; Yates, Stuart, Journal of Functional Analysis 188 (111–136) 2002 |
Portfolio optimization, hidden Markov models, and technical analysis of P&F-charts Elliott, Robert; Hinz, J, International Journal of Theoretical and Applied Finance 5 (385–399) 2002 |
An edge-of-the-wedge theorum for hypersurface CR functions Eastwood, Michael; Graham, C, Journal of Geometric Analysis 11 (589–602) 2001 |
Csiszr f-divergence, Ostrowski's inequality and mutual information Dragomir, S; Gluscevic, Vido; Pearce, Charles, Nonlinear Analysis-Theory Methods & Applications 47 (2375–2386) 2001 |
Equivariant Seiberg-Witten Floer homology Marcolli, M; Wang, Bai-Ling, Communications in Analysis and Geometry 9 (451–639) 2001 |
On best-approximation problems for nonlinear operators Howlett, P; Pearce, Charles; Torokhti, Anatoli, Nonlinear Functional Analysis and Applications 6 (351–368) 2001 |
On the extended reversed Meir inequality Guljas, B; Pearce, Charles; Pecaric, Josip, Journal of Computational Analysis and Applications 3 (243–247) 2001 |
The Mx/G/1 queue with queue length dependent service times Choi, B; Kim, Y; Shin, Y; Pearce, Charles, J.A.M.S.A. Journal of Applied Mathematics and Stochastic Analysis 14 (399–419) 2001 |
The modelling and numerical simulation of causal non-linear systems Howlett, P; Torokhti, Anatoli; Pearce, Charles, Nonlinear Analysis-Theory Methods & Applications 47 (5559–5572) 2001 |
Best estimators of second degree for data analysis Howlett, P; Pearce, Charles; Torokhti, Anatoli, ASMDA 2001, Compiegne, France 12/06/01 |
Optimal successive estimation of observed data Torokhti, Anatoli; Howlett, P; Pearce, Charles, International Conference on Optimization: Techniques and Applications (5th: 2001), Hong Kong, China 15/12/01 |
A continuous time kronecker's lemma and martingale convergence Elliott, Robert, Stochastic Analysis and Applications 19 (433–437) 2001 |
Statistical analysis of medical data: New developments - Book review Solomon, Patricia, Biometrics 57 (327–328) 2001 |
Meta-analysis, overviews and publication bias Solomon, Patricia; Hutton, Jonathon, Statistical Methods in Medical Research 10 (245–250) 2001 |
Spectral analysis of heart sounds and vibration analysis of heart valves Mazumdar, Jagan, EMAC 2000, RMIT University, Melbourne, Australia 10/09/00 |
A martingale analysis of hysteretic overload control Roughan, Matthew; Pearce, Charles, Advances in Performance Analysis 3 (1–30) 2000 |
A note on higher cohomology groups of Khler quotients Wu, Siye, Annals of Global Analysis and Geometry 18 (569–576) 2000 |
Disease surveillance and data collection issues in epidemic modelling Solomon, Patricia; Isham, V, Statistical Methods in Medical Research 9 (259–277) 2000 |
Local Constraints on Einstein-Weyl geometries: The 3-dimensional case Eastwood, Michael; Tod, K, Annals of Global Analysis and Geometry 18 (1–27) 2000 |
On Anastassiou's generalizations of the Ostrowski inequality and related results Pearce, Charles; Pecaric, Josip, Journal of Computational Analysis and Applications 2 (215–276) 2000 |
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